منابع مشابه
TRDB—The Tandem Repeats Database
Tandem repeats in DNA have been under intensive study for many years, first, as a consequence of their usefulness as genomic markers and DNA fingerprints and more recently as their role in human disease and regulatory processes has become apparent. The Tandem Repeats Database (TRDB) is a public repository of information on tandem repeats in genomic DNA. It contains a variety of tools for repeat...
متن کاملTandem Repeats in Prokaryotic Genomes
1 Department of Information Science, Graduate School of Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki 036-8561, Japan 2 Department of Electronic and Information System Engineering, Faculty of Science and Technology, Hirosaki University, 3 Bunkyo-cho, Hirosaki 036-8561, Japan 3 Graduate School of Mathematics, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan 4 Protonic NanoMachine Pro...
متن کاملTandem repeats: two different approaches
where the pattern composed by the three bases CGG in the left sequence is transformed in five identical and adjacent copies. Additional mutational laws can cause mismatch between the bases of the pattern and the bases of the repeated copies, for this reason sometimes there is no an exact repetition of the pattern but there is an approximate repetition in which every copies of the pattern is qui...
متن کاملZur Evolution von Short Tandem Repeats
The stepwise mutation model (SMM) is a simple, widely used model to describe the evolutionary behaviour of microsatellites. We apply a Markov chain description of the SMM and derive the marginal and joint properties of this process. In addition to the standard SMM, we also consider the normalised allele process. In contrast to the standard process, the normalised process converges to a stationa...
متن کاملAn Algorithm for Approximate Tandem Repeats
A perfect single tandem repeat is defined as a nonempty string that can be divided into two identical substrings, e.g., abcabc. An approximate single tandem repeat is one in which the substrings are similar, but not identical, e.g., abcdaacd. In this paper we consider two criterions of similarity: the Hamming distance (k mismatches) and the edit distance (k differences). For a string S of lengt...
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ژورنال
عنوان ژورنال: Cell Cycle
سال: 2010
ISSN: 1538-4101,1551-4005
DOI: 10.4161/cc.9.23.14164